PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504282.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 227aa    MW: 25522.5 Da    PI: 7.891
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504282.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-3070128259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s  gCp++k+vers+ dp++++itY+++Hnh+
  XP_004504282.1  70 SDSWAWRKYGQKPIKGSPYPRGYYRCSSCkGCPARKQVERSRVDPTMLVITYSSDHNHP 128
                     69************************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3164130IPR003657WRKY domain
SuperFamilySSF1182906.8E-2667130IPR003657WRKY domain
SMARTSM007741.2E-3469129IPR003657WRKY domain
PROSITE profilePS5081131.47970130IPR003657WRKY domain
PfamPF031063.5E-2571128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MKSKFNNPHR STQQEDIAQD SPPSSTAFNT SLSSSSSKKS RRSIQKRVVQ IPIKENEGTR  60
LKGESNTPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSCKG CPARKQVERS RVDPTMLVIT  120
YSSDHNHPWP VSRNNRPKSQ LDPVEPDHKT VDQLCGDDLG WLVQIDTTSS VILESPIMAE  180
FDDDVASVFL PMGEEDESLF ADLGELPECS TVFRHGLLDS RRRLTAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-18701301574WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195841e-78EU019584.1 Glycine max WRKY48 (WRKY48) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504282.11e-169PREDICTED: probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP563e-81WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A072TU111e-120A0A072TU11_MEDTR; Uncharacterized protein
STRINGGLYMA08G12460.12e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.18e-76WRKY DNA-binding protein 65